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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcattcaaaagtaattgtttgtgaatataggtgtaagcttgtttcactaatatggttctgctttgagtttttagtttttttaattgatgctgttttcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAG

Basic information

species Glycine max
transcript GLYMA05G34630.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34630.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 3'ss of exon 6
gtaggcattcaaaagtaattgtttgtg----------------aatata----ggtgtaagcttgtttcactaatatggttctgctttgagtttttagttttttta--attgatgctgttttcatata-cagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAG
|||||||| |||||| | |||| |||                 || |||    | |||| |   |||| |||| |   | | |     | |   | | |  | ||   ||   |    || |    |  ||||||||||| |||||||| ||||||||||| |||| |||  | |||||||||||||| ||||| ||||| |||||||| ||  |||||||||| |||| ||
gtaggcatccaaaagcatttgtctgtataagcctggtattgcaaacatattttgctgtaggtcagttttactactgcagatgtctccagggcactcattcctgttgtgatccttttaattgtttcctgtcagATGATGGAAAACATGCTATTACAAGAGGGAGACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014687|gb|CX701429.1|CX701429
EST:     TGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: TGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
EST: gi|192322766|gb|FK014457.1|FK014457
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggttctgctttgagtttttagtttttttaattgatgctgttttcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAG
                                       ctgttttc  CT-rich tract
           tttgagtttttagttt  TA-rich tract