1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttgcataggaccatgctctaaattaaaatattcggtttattgttgtactttgtggtctataattacctgctgatcattattatcaatttatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGGCTGGTCGTATGGCATTTTAGATCAATCTCATCCACACATTCTTGTGAA
species | Glycine max |
transcript | GLYMA05G34280.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGTAGCCAG ATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGEST: gi|254326254|gb|GR840846.1|GR840846
genomic: TGAAAGTAGCCAGgtaagtcata ... tatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTG
EST: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAG ATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGEST: gi|6846393|gb|AW348683.1|AW348683
genomic: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcata ... tatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTG
EST: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAG ATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGEST: gi|7042083|gb|AW471977.1|AW471977
genomic: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcata ... tatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTG
EST: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAG ATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTG
genomic: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcata ... tatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTG
tgtactttgtggtctataattacctgctgatcattattatcaatttatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGGCTGGTCGTATGGCATTTTAGATCAATCTCATCCACACATTCTTGTGAA
tgctgat putative branch site (score: 3)
tttatctttc putative PPT
atcattattatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgcataggaccatgctctaaattaaaatattcggtttattgttgtactttgtggtctataattacctgctgatcattattatcaatttatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGGCTGGTCGTATGGCATTTTAGATCAATCTCATCCACACATTCTTGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
-cttgcat
- - - - - - -catgctc
- - - - - - - - - - -aaattaaa
- - - - - - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - -ctttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctga