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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctattgtcctggtcagaatcttgaagattaggtgctgtgtgtttacagtagttgtttgtgtgtttctaacctttgatgttctgctcattgcttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGA

Basic information

species Glycine max
transcript GLYMA05G33790.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33790.2 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G122296_T01 (Zea mays), 3'ss of exon 7
tctattgtcctggtcagaatcttgaagattaggtgctgtgtgtttacagtagttgtttgtgtgtttctaacctttgatgtt-ctgctcattgcttggg--cagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGA
            || |||      |    |   ||   | | |||    || | || ||||   | | |   ||  |||||  |  ||||  ||  |   |||| || ||||| || |||||||  || |||   || |||||||| ||||| || || |||||||| |||||  ||||||||||||| || || ||||||||
------------gtgagaggacacatccctttttgtcatttttttgtgata-tcgtatgtgcagtgcca---ttaaatgttattattcatcactatgcaccagAGACTACAAAAGAATTTGTGGAGAAACTGAATCTTAAGCCTGGGCAGAAGGTGCTTGATGTTGGATGTGGAATTGGGGGAGGTGACTTTTATATGGCTGA

upper sequence: GLYMA05G33790.2 (Glycine max), 3'ss of exon 6
lower sequence: AT1G48600.1 (Arabidopsis thaliana), 3'ss of exon 6
tctattgtcctggtcagaatcttgaagattaggtgctgtgtgtttacagtagttgt-ttgtgtgtttctaacctttgatgttctgctcattgcttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGA
    |  | |   ||  | ||||  |  ||      | ||    ||| ||| |||| |||| ||  | | | |||| |||||||  |  || | |   |||| || || || || |||||||| ||| |||  || || || || |||||||| || ||||||||||||||| | || |||||||| ||||||||||||||
---gtaattccattcttactcttttatcttca----tatggacatac-gtacttgtattgtctgagtgttatcttt-atgttct--tgttttccttaacagAGACAACTAAAGAATTTGTGGCGAAGATGGACCTTAAACCGGGACAGAAAGTCCTAGATGTTGGTTGTGGTATCGGTGGAGGTGACTTCTACATGGCTGA

upper sequence: GLYMA05G33790.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g05220.t01 (Vitis vinifera), 3'ss of exon 6
tctattgtcctggtcagaatcttgaagattaggtgctgtgtgtttacagtagttgtttgtgtgtttctaacctttgatgttctgctcattgc----ttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGA
 |||  |  |   |    ||     |||     | |  |   || ||  || |   ||     || | ||   |||    |  |   ||  |    |||  ||||||| |||||||| |||||||| ||| |||  || ||||| || |||||||| ||||| || ||||||||  |||| |||||||| ||||||||||||||
-ctaa-gcacaaattgccattcatgagaaattattcgtttaattaactataataaattcca-attaccaattcttg-cactgagaaaatcccgaatttgatcagAAACAACAAAGGAATTTGTGGCTAAGTTGGAGCTTAAGCCCGGCCAGAAAGTCCTGGACGTAGGTTGTGGCATTGGCGGAGGTGACTTCTACATGGCTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256036|gb|BQ452924.1|BQ452924
EST:     ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTG                         AAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG
genomic: ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGgtatgccttc ... gcttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG
EST: gi|15288179|gb|BI472070.1|BI472070
EST:     ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTG                         AAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG
genomic: ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGgtatgccttc ... gcttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG
EST: gi|7686300|gb|AW756876.1|AW756876
EST:     ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTG                         AAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG
genomic: ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGgtatgccttc ... gcttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG
EST: gi|298178991|gb|HO024726.1|HO024726
EST:     ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTG                         AAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG
genomic: ACGATATGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGgtatgccttc ... gcttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtagttgtttgtgtgtttctaacctttgatgttctgctcattgcttgggcagAAACGACAAAGGAGTTTGTGGCAAAGCTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTGGTTGTGGTGTTGGGGGAGGTGATTTCTACATGGCTGA
                  tttctaa  TA-rich tract