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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttactggagtgtttctgttccttttagttgtcataattttcttgttatttagtcttcaatcctggcttctatggtgaccaactgttccatggttgcagGCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTGTTCACTTCTTTTACAATATTGGCCAGCGCAATCATGTTTAAG

Basic information

species Glycine max
transcript GLYMA05G33020.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33020.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G097421_T01 (Zea mays), 3'ss of exon 6
atttactggagtgtttctgttccttttagttgtcataattttcttgttatttagtcttcaatcctggcttctatggtgaccaactgttccatggttgcagGCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTGTTCACTTCTTTTACAATATTGGCCAGCGCAATCATGTTTAAG
              | | |      |||  | | | |||||   |   | |   | | | ||  ||   |  ||    ||  |   |   |   || ||||||||||||| ||| || || |||||||||||||| ||||| |||||  |||| || ||  | ||||| ||||| || || || ||||| |||
-------------gtacagccagcattaact-ttaaaatttaggtagcaat--atttacgatgttgatatgcatttccac--atcatgttaaactttcagGCATTGGATACTTTCAATACTGCAGTTGTTTCTCCCATCTACTATGCGATGTTTACATCCCTCACAATTTTGGCAAGTGCCATAATGTTCAAG

upper sequence: GLYMA05G33020.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 6
atttactggagtgtttctgttccttttagttgtcataattttcttgttatttagtcttcaatcct--ggcttctatggtgaccaactgttccatggttgcagGCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTGTTCACTTCTTTTACAATATTGGCCAGCGCAATCATGTTTAAG
  |||      | ||  | |||  | |     | |   ||  ||  ||||  | |    |||     |  || | || || |  | | |    || || |||||| |||||| ||| |||||||| ||||||||||| ||||| ||||| |||||||| || ||||| || || ||||| |  || |||||||||
--ttatcacttttttcgttttcagtcttacatttaattttacctaattatagattgactaatgtgtagatttatctgatggctgaatttggtttgtttccagGCACTGGATACTTTCAACACAGCCGTTGTTTCTCCCATCTACTATGCCTTGTTCACATCATTTACTATTTTAGCCAGTGTGATTATGTTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193314336|gb|FK280137.1|FK280137
EST:     TACCTTAATATG                         GCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTG
genomic: TACCTTAATATGgtcagtacta ... atggttgcagGCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTG