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gtaagtcacgctgacaaacatttatatgaacttttttttttatatatatatattttctaattgttattagtttaaatttctccttaccctgccaaaagtgaagtgattttaagctgcccctgcccttcctttatggtgcagTTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAGGAGAAAGAGTTGGCACTTTGATTGGAGCAACCTGGAATTCTACCGTATC
species | Glycine max |
transcript | GLYMA05G32340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAG TTGTTGTCTTCAATCTTAACATACCTGGTAACATTGAGAAAGCTATTAAAGEST: gi|9902835|gb|BE611803.1|BE611803
genomic: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAGgtaagtcacg ... tatggtgcagTTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAG
EST: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAG TTGTTGTCTTCAATCTTAACAAACCCTG-TAACATTGAGGAAGCTATTAAAEST: gi|209717497|gb|BW679658.1|BW679658
genomic: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAGgtaagtcacg ... tatggtgcagTTGTTGTCTTCAATCTTAACAAACC-TGGTAACATTGAGAAAGCTATTAAA
EST: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAG TTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAGEST: gi|120496861|gb|EH225028.1|EH225028
genomic: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAGgtaagtcacg ... tatggtgcagTTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAG
EST: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAG TTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGTTATTAAAG
genomic: AGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAGgtaagtcacg ... tatggtgcagTTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAG
ccctgccaaaagtgaagtgattttaagctgcccctgcccttcctttatggtgcagTTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAGGAGAAAGAGTTGGCACTTTGATTGGAGCAACCTGGAATTCTACCGTATC
ctgcccctgcccttcc CT-rich tract
tgattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcacgctgacaaacatttatatgaacttttttttttatatatatatattttctaattgttattagtttaaatttctccttaccctgccaaaagtgaagtgattttaagctgcccctgcccttcctttatggtgcagTTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAGGAGAAAGAGTTGGCACTTTGATTGGAGCAACCTGGAATTCTACCGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA