1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtttccatattactctactatggagctatatacacaagaatgtttctcgtgtttctgttatttttgtttattattctcattttttgtgtaatgtgccagTCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTT
species | Glycine max |
transcript | GLYMA05G31630.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACA TCATAGGAAATGTCCGGGGAAAGGGGEST: gi|193319792|gb|FK284753.1|FK284753
genomic: CGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACAgtatgttgtc ... aatgtgccagTCATAGGAAATGTCAGGGGAA-GGGG
EST: CGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACA TCATAGGAAATGTCAGGGGAAGGGGACTAATGGTEST: gi|193397000|gb|FK361984.1|FK361984
genomic: CGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACAgtatgttgtc ... aatgtgccagTCATAGGAAATGTCAGGGGAAGGGGACTAATGGT
EST: CGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACA TCATAGGAAATGTCAGGGGAAGGGGACTAATGGT
genomic: CGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACAgtatgttgtc ... aatgtgccagTCATAGGAAATGTCAGGGGAAGGGGACTAATGGT
tctcgtgtttctgttatttttgtttattattctcattttttgtgtaatgtgccagTCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTT
ttatttttgtttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttccatattactctactatggagctatatacacaagaatgtttctcgtgtttctgttatttttgtttattattctcattttttgtgtaatgtgccagTCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT