1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtttactgcgttatcatgcacttgtaattcattctcattcgtggattcttcttaattgaaaatttcttctgttccatttcgttcccattagctttattgtgtttctctatttaatattcatgtgtgtttcctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATCCTTTGTATGGTTTAGGAGAGCTTCCCCAG
species | Glycine max |
transcript | GLYMA05G30140.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGEST: gi|120533277|gb|EH261410.1|EH261410
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGG
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|193622227|gb|FK569603.1|FK569603
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|192313375|gb|FK005147.1|FK005147
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|208095648|gb|GD897138.1|GD897138
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: CCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|208259467|gb|GE053911.1|GE053911
genomic: CCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|207752054|gb|GD724495.1|GD724495
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|192313374|gb|FK005146.1|FK005146
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|207771777|gb|GD742552.1|GD742552
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|208127908|gb|GD922140.1|GD922140
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|19347279|gb|BM892159.1|BM892159
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|6915949|gb|AW397479.1|AW397479
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|193497014|gb|FK459492.1|FK459492
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|193531593|gb|FK490965.1|FK490965
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: TCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|24205309|gb|BU964562.1|BU964562
genomic: TCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|14125915|gb|BG790353.1|BG790353
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|120533574|gb|EH261707.1|EH261707
genomic: ACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|208337504|gb|GE136384.1|GE136384
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|254342789|gb|GR858951.1|GR858951
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCAC
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCAC
cattagctttattgtgtttctctatttaatattcatgtgtgtttcctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATCCTTTGTATGGTTTAGGAGAGCTTCCCCAG
atttaat putative branch site (score: 4)
tttcctactt putative PPT
tttctctatttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttactgcgttatcatgcacttgtaattcattctcattcgtggattcttcttaattgaaaatttcttctgttccatttcgttcccattagctttattgtgtttctctatttaatattcatgtgtgtttcctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATCCTTTGTATGGTTTAGGAGAGCTTCCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT