1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tacacttattttacacttattttatcctaaccttaaacatcaatagttttggaatggagggagtagaatttatatatagtctgtgcttataattttatagGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAG
species | Glycine max |
transcript | GLYMA05G29700.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATG GTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTEST: gi|193454456|gb|FK418755.1|FK418755
genomic: CTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATGgtatgataac ... aattttatagGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGT
EST: CTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATG GTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATGgtatgataac ... aattttatagGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAA
gttttggaatggagggagtagaatttatatatagtctgtgcttataattttatagGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAG
agtagaatttatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacacttattttacacttattttatcctaaccttaaacatcaatagttttggaatggagggagtagaatttatatatagtctgtgcttataattttatagGTTGAAGGAGAAAAGACTTTTCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA