Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttagaaacttagaattcatcaacctatatatgtaaatatacatcatcccacaaagtatatagcatataattaatacattttaaaatagaattaggaatcatgcaagaccaaaacattgctataagatacaactgatattgtgatatcgaaaattgatgggtataaatgactttatctgatttgtagCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGAGATGGGATATGGCAGGCATCCAGCTCAAACTCATGGTGAAGCCCTCT

Basic information

species Glycine max
transcript GLYMA05G28140.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207811601|gb|GD783970.1|GD783970
EST:     AACAGGTCTCTCAGACAAAGG                         CAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAA
genomic: AACAGGTCTCTCAGACAAAGGgtaagttaga ... tgatttgtagCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAA
EST: gi|6455734|gb|AW186417.1|AW186417
EST:     GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG                         CAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATTCCGGAGTTGAA
genomic: GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGgtaagttaga ... tgatttgtagCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAA
EST: gi|208215896|gb|GE014614.1|GE014614
EST:     GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG                         CAGTTGGAAAGGGTAATCAAAATAAATCCACTCCA
genomic: GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGgtaagttaga ... tgatttgtagCAGTTGGAA-GGGTA-TCAAA-TAAATCCACTCCA
EST: gi|207822175|gb|GD793536.1|GD793536
EST:     GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG                         CAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAA
genomic: GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGgtaagttaga ... tgatttgtagCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAA
EST: gi|207777183|gb|GD748278.1|GD748278
EST:     GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG                         CAGCTGGAAGG
genomic: GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGgtaagttaga ... tgatttgtagCAGTTGGAAGG
EST: gi|208314542|gb|GE113878.1|GE113878
EST:     GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG                         CAGTTGGAAGGGTATACAAAATAAATCCACTCCA
genomic: GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGgtaagttaga ... tgatttgtagCAGTTGGAAGGGTAT-CAAA-TAAATCCACTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatattgtgatatcgaaaattgatgggtataaatgactttatctgatttgtagCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGAGATGGGATATGGCAGGCATCCAGCTCAAACTCATGGTGAAGCCCTCT
                                      ctttatct  CT-rich tract
                             tataaatgactttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttagaaacttagaattcatcaacctatatatgtaaatatacatcatcccacaaagtatatagcatataattaatacattttaaaatagaattaggaatcatgcaagaccaaaacattgctataagatacaactgatattgtgatatcgaaaattgatgggtataaatgactttatctgatttgtagCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGAGATGGGATATGGCAGGCATCCAGCTCAAACTCATGGTGAAGCCCTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC