Sequence
atgc intronic sequence ATGC exonic sequence...ttttcatattttaatgattgtgaatatagcagtttctttttcttttttatttattttgaataattaaataacttcctaacatttggtttgattgttgtagACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAG
Basic information
species | Glycine max |
transcript | GLYMA05G26100.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26100.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G34560.1 (Arabidopsis thaliana), 3'ss of exon 6
-------------------------------------------------ttttcatattttaatgattgtgaatat----------agcagtttctttttcttt-tttattta--ttttgaataattaaataactt----cctaaca-tttggtttgattgttgtagACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAG
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gtgcgatgattctatctcgaatgtgtttttacttttgaactcttactctcttttgcatttcaattcatatgcacaccaaaccattaactaatttcttgagcctagctcaattagatcttgtaaagtttattttcttgatgcataacagtcttattcgtcttgtgcagACTATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAACATCTCAGCCTCATCTGTTGTTAGCAAATGGAGAG
upper sequence: GLYMA05G26100.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 3'ss of exon 6
ttttcatattttaatgattgtga-atatagcagtttctttttcttttttatttattttgaataattaaataacttcctaacatttggtttgattgttgtagACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAG
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-ttgcctttccaaatttctctgtcatgatgttgcttgatcatgctcttcttctaggttgaattgttaattgttaattgaaatctccattcttttgttgcagACTATGCTTGCAAAGGCTGTCGCAACCGAGTGCAAAACCACATTTTTCAATATTTCTGCATCCTCTGTTGTCAGCAAATGGCGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13789838|gb|BG652429.1|BG652429EST: TATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAG ACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACNNNNNNNAAT
genomic: TATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattg ... attgttgtagACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatttattttgaataattaaataacttcctaacatttggtttgattgttgtagACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAG
ttattttgaataatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttcatattttaatgattgtgaatatagcagtttctttttcttttttatttattttgaataattaaataacttcctaacatttggtttgattgttgtagACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAG
- - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg