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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtttcttaagaccttaatatctttttattttcttttaattcaggttgaaattctcagagcttagattaaccagacagttaaagatagatatcaattaatataaatgcttatgatgttaacaaaagaggaaaattgatgtttattcaagtcatttcgaacttttgattttagGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT

Basic information

species Glycine max
transcript GLYMA05G22970.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22970.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os07g03250.1 (Oryza sativa), 3'ss of exon 2
gtaaggtttcttaagaccttaatatctttttattttcttttaattcaggttgaaattctcagagcttagattaaccagacagttaaagatagatatcaattaatataaatgcttatgatgttaacaaaagaggaaaattgatgtttattcaagtcatttcgaacttttgattttagGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT
                                                   | || | | |    ||| |||   ||    ||         |  | |  |  || ||||| |   | || ||| ||   |  | || | |      |||   | | || |       |   ||||| || ||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| || ||||| ||||| ||||| || 
---------------------------------------------------gtaagtgtta----ttacattcctcatgtggt--------aactttacatggtaaaaatgttctcg-tggtaaaaagtaaaaataaataaaaaaagttctt-ttactttggttgggggtgattagGTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCG

upper sequence: GLYMA05G22970.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaggtttcttaagaccttaatatctttttattttcttttaattcaggttgaaattctcagagcttagattaaccagacagttaaagatagat-atcaattaatataaatgcttatgatgttaacaaaagaggaaaattgatgtttattcaagtcatttcgaacttttgattttagGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT
                                                          | ||  |  |  | || |      | |  |||  || ||       |  || | ||   ||   |||  |  ||     | |  | ||||||   ||    |  ||  |||    ||||| |||||||||||||| || ||||||||  |||| |||||||| || ||||||||||| ||||| ||||| |||||||  || ||  ||
---------------------------------------------------------gtaagtacacacttcaatct-----tcatggattcatgatttccccctcaaatttctcgggaaaataatgatggattttgact--tctttatttttgtttgattaaatcttta---ttagGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCT

upper sequence: GLYMA05G22970.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 3
gtaaggtttcttaagaccttaatatctttttattttcttttaattcaggttgaaattctcagagcttagattaaccagacagttaaagatag-atatcaattaatataaatgcttatgatgttaacaaaagaggaaaattgatgtttattcaagtcatttcgaacttttgattttagGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT
                                                                               ||||| |   | | |   |   | ||| | | | | |  || ||||  | | |    | |  || |||  |||  |||| ||       ||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| || || || || || || || 
----------------------------------------------------------------------------tttcagtttatcttggtaagccttcttatagagaggttcaacat-ttaatcatacaccccattcaatttttcatcatctcatgtcctgaaactgattttagGGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCG

upper sequence: GLYMA05G22970.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ26861 (Selaginella moellendorffii), 3'ss of exon 3
gtaaggtttcttaagaccttaatatctttttattttcttttaattcaggttgaaattctcagagcttagattaaccagacagttaaagatagatatcaattaatataaatgcttatgatgt-taacaaaagaggaaaattgatgtttattcaag---tcatttcgaacttttgattttagGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT
                                                                                | |      |  |  |   | | | | | |  || |  |   |     |||       | | |  | ||| ||    || |  ||    |        |||||||||||| |  ||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||  | ||   ||| |||||||||
--------------------------------------------------------------------------------aatgcgcagtttacctgggtgagtgtcactctttgttgttcgtgcttgaagttttttttcgttcctcatttaatgtttcttgccgggaatgaatgcgcagGGGGTTATGACAAAGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCT

upper sequence: GLYMA05G22970.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ21317 (Selaginella moellendorffii), 3'ss of exon 3
gtaaggtttcttaagaccttaatatctttttattttcttttaattcaggttgaaattctcagagcttagattaaccagacagttaaagatagatatcaattaatataaatgcttatgatgt-taacaaaagaggaaaattgatgtttattcaag---tcatttcgaacttttgattttagGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT
                                                                                | |      |  |  |   | | | | | |  || |  |   |     ||| |     | | |  | ||| ||    || |  ||    |        |||||||||||| | |||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||  | ||   ||| |||||||||
--------------------------------------------------------------------------------aatgcgcagtttacctgggtgagtgtcactctttgttgttcgtgcttgaagtgttttttcgttcctcatttaatgtttcttgccgggaatgaatgcgcagGGGGTTATGACAAGGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaaaagaggaaaattgatgtttattcaagtcatttcgaacttttgattttagGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT
                                          ctttt  CT-rich tract
            aaaattgatgtttatt  TA-rich tract