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...gtgtgtgttctacttatatatggctatagtattggtgtagaagcaactaaaaagagatgatgatggggaatttgataatcttttttccttcatgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG
species | Glycine max |
transcript | GLYMA05G22320.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|31470201|gb|CD412349.1|CD412349
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|15815566|gb|BI787841.1|BI787841
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|16279966|gb|BI943709.1|BI943709
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: TGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|18848708|gb|BM567820.1|BM567820
genomic: TGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|17153984|gb|BM143917.1|BM143917
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|20814462|gb|BQ298940.1|BQ298940
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|192303250|gb|FG995586.1|FG995586
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|31465610|gb|CD407638.1|CD407638
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATTAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|16343159|gb|BI968754.1|BI968754
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|22927857|gb|BU544996.1|BU544996
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|4299430|gb|AI442903.1|AI442903
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: ATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|9819518|gb|BE555031.1|BE555031
genomic: ATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCCTTTATGGACATGATAACTATGATCAACTGCTCAAAATAGCTCAC GTTCTTTGGACTGACGGATTAAGTGCTTATTTAEST: gi|7640075|gb|AW734384.1|AW734384
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTA
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGEST: gi|17401154|gb|BM177936.1|BM177936
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
EST: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
actaaaaagagatgatgatggggaatttgataatcttttttccttcatgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG
tcttttttccttcatg CT-rich tract
aatttgataatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgttctacttatatatggctatagtattggtgtagaagcaactaaaaagagatgatgatggggaatttgataatcttttttccttcatgcaatagGTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG
gtgtgtg
- - - - - - - - - - - - - - - attggtg
- - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgggg