Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaccaagtttgtcattatatactgtttcacatacttattttttttccatggtagttagcgcattattattctgcagAATGGCTTGAACATGGATGGTAACTATGGGTATGAGGACTGCATTGGTTTAAAAGTAAAGCCACGCCAAGGGGATGGTCTTCTATTTTATTCATTGCTCA
Basic information
species | Glycine max |
transcript | GLYMA05G22270.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G22270.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0129g00460.t01 (Vitis vinifera), 3'ss of exon 6
--------gtaaaaccaagtttgtcattatatactgtttcacatacttattttttttccatggtagttagcgcattattattctgcagAATGGCTTGAACATGGATGGTAACTATGGGTATGAGGACTGCATTGGTTTAAAAGTAAAGCCACGCCAAGGGGATGGTCTTCTATTTTATTCATTGCTCA
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gtaaggatcagaacccctgtttgtttccctgcatttgttgaattttcaaatcaacttttgt--cactcatcctaggccttgatttcagAATGGCTTGAACATGGATAAAGACTACGATTTCCAAAGGTGTATTGGTTTGAAAGTAAAGCCACACCAAGGGGATGGACTTCTATTCTACTCAATGTTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192304582|gb|FG997926.1|FG997926EST: TATATTTAACTGATGTTGAGGAAGGTGGGGAAACTACGTTTCCATTTGAG AATGGCTTGAACATGGATGGTAACTATGGGTATGAGGACTGCATTGGTTTA
genomic: TATATTTAACTGATGTTGAGGAAGGTGGGGAAACTATGTTTCCATTTGAGgtaaaaccaa ... tattctgcagAATGGCTTGAACATGGATGGTAACTATGGGTATGAGGACTGCATTGGTTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtttcacatacttattttttttccatggtagttagcgcattattattctgcagAATGGCTTGAACATGGATGGTAACTATGGGTATGAGGACTGCATTGGTTTAAAAGTAAAGCCACGCCAAGGGGATGGTCTTCTATTTTATTCATTGCTCA
ttattct CT-rich tract
acatacttattttttt TA-rich tract