1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacatttagttttctgaaatgaggctgtgaagattttgttgttcccctgatgcaaatcaaagaaattaatttgtttcagttctgatttccatcttggcagCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTGGCAGCCGGCAG
species | Glycine max |
transcript | GLYMA05G21910.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG CCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTGEST: gi|51337917|gb|CO981783.1|CO981783
genomic: TTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgcaagtatta ... atcttggcagCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTG
EST: TTTNNNTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG CCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTG
genomic: TTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgcaagtatta ... atcttggcagCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTG
cctgatgcaaatcaaagaaattaatttgtttcagttctgatttccatcttggcagCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTGGCAGCCGGCAG
ttctgat putative branch site (score: 3)
tttccatctt CT-rich tract
aaatcaaagaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatttagttttctgaaatgaggctgtgaagattttgttgttcccctgatgcaaatcaaagaaattaatttgtttcagttctgatttccatcttggcagCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTGGCAGCCGGCAG
- - - - - - - - - - -aggctgt
- - - - - - - - - - - - - - - - - - - - - - - - gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa