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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttggttatatttacttaatacatactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcagTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTTGCCTCTTTGAAAAACACAGAG

Basic information

species Glycine max
transcript GLYMA05G21570.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21570.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0024g00850.t01 (Vitis vinifera), 3'ss of exon 6
gtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttggttatatttacttaatacatactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcagTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTTGCCTCTTTGAAAAACACAGAG
               ||     | |   |  |    || |||  ||| | |  |    | |||  |||    ||| || |   ||  |   |     || ||  |  ||| || ||       || ||| | |||||| | || ||||||||| ||||||| || || ||||| || ||||||||| ||||||||||||||
--------------ttgccatatctaggtgaaacaaatttgtggattctagccta---acattgcctttccccatcctttt-tataataatta----tttctcaaattttattgta-------atacagGTAGCAGTGCTAGCAGGAGATTTTCTGCTTTCACGAGCCTGTGTGGCGCTTGCCTCTCTGAAAAACACAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424725|gb|CA936245.1|CA936245
EST:     CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAG                         TTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT
genomic: CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctga ... aaaaatgcagTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT
EST: gi|151411625|gb|EV281436.1|EV281436
EST:     CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAG                         TTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT
genomic: CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctga ... aaaaatgcagTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcagTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTTGCCTCTTTGAAAAACACAGAG
                              aggttttttttattca  TA-rich tract