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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttcttctacttttgtcgtcctatgtgcctttctcttggtgttgtattaggctattcttattcagtcattttaatagaaagtgttctttactgaatgagttcctatctttatttgacaaagcagGATCTAAACTTCTGATTGGAGAACTTCCTTCTATACTTGATGGATCAGCAAGAGTAAAGGCACAACCTCAAGACGACTCTAAGGCTACATTGGCTCCAAA

Basic information

species Glycine max
transcript GLYMA05G09280.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09280.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0006g01830.t01 (Vitis vinifera), 3'ss of exon 7
gtatgatttcttctacttttgtcgtcctatgtgcctttctcttggtgttgtattaggctattcttattcagtcattttaatagaaagtgttctttactgaatgagttcctatctttatttgacaaagcagGATCTAAACTTCTGATTGGAGAACTTCCTTCTATACTTGATGGATCAGCAAGAGTAAAGGCACAACCTCAAGACGACTCTAAGGCTACATTGGCTCCAAA
                          |  | ||  ||     |  |||||| | |   |||   |   |||        || |    |||  | | ||   |||      |||| ||||   | | ||||||||||| ||||||||    |||||||| |||||| |||||||||||||||   | || |||||||| ||||| ||||| || || || |||||||||||
-------------------------tcagtttgagttgaatatc-tgttgtgtaaaaatat---tggccagctgaacatat-gcccttgtcttgttcttgttgatgaatgatctctattaacccatgcagGATCTAAGCTTCTGATCCATGAACTTCCCTCTATATTTGATGGATCAGCAAACCTGAAAGCACAACCCCAAGATGACTCCAAAGCAACTTTGGCTCCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatagaaagtgttctttactgaatgagttcctatctttatttgacaaagcagGATCTAAACTTCTGATTGGAGAACTTCCTTCTATACTTGATGGATCAGCAAGAGTAAAGGCACAACCTCAAGACGACTCTAAGGCTACATTGGCTCCAAA
                                  tatctttattt  TA-rich tract