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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttttcttttaccccatctaaatgtgtttactgtaatattccctgtgaccactttttttataagtattcttttatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGAGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA

Basic information

species Glycine max
transcript GLYMA05G08990.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08990.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g48980.1 (Oryza sativa), 3'ss of exon 4
---------gtgtttttcttttaccccatctaaatgtgtttactgtaatattccctgtgaccactttttttataagtattcttttatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGAGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA
          | | | |  || |  |  |   | |  || ||    |||||    | |  | ||| | || ||   |  |  |||  || |  |          ||||   | || || ||||| ||| |||||||||| ||||| || ||||||||||||||| |  |  | ||| || |||||  | ||  |||||  ||   ||
gtaattgaaatatatattgttcattcatttccatttggtctataaaaatataagttttttcaactctgttaatcccttcttgtttggctttgcaac------tgcagGCTCTTGGAGTGCCCACAGGTTCTCATGGTGCTTTCCGTGACTATCAAGTTGATGCAGTTTCTTTAGAATTTGCACCAGCATTTCATCTTAAAAACGAGA

upper sequence: GLYMA05G08990.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0066g00580.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------------------------gtgtttttcttttaccccatctaaatgtgtttactgtaatattccc-tgtgaccacttttttta-taagtattcttt-tatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGAGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA
                                                                       ||   |   || ||   ||| |   ||  |||      |||  |   | ||     | |   || ||| ||    || | | | ||| ||  | ||  ||||  || ||||||||||||||  | |||||||| || || ||||| ||||| |||||||| ||  |||| |||||||| |||||| || | | ||| | ||
gtgcatagcacttttagttgtttatttgttatctttgtgacaaaagtggtttgagggggagggtttgggtggttgatactttctatttcatgttc-tgcatttgaaaggataaacatatttggtttttctcactaataactaagagttgtgtttatat-ttcctgctgccagGCATTGGGTGTTCCCACTGGCTCCCATGGTGCTTTTCGTGATTACCAAGTCGATGCAATTACTTTGGAGATTTCACCTAAAGTTGCTTTGAATAATAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208265308|gb|GE065048.1|GE065048
EST:     CTGAGTATGTTGAGGGTGCTGCTACACTGGCAAGTTCATTGTATTACCAG                         GGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGAGATTATCAAGTT
genomic: CTGAGTATGTTGAGGGTGCTGCTACACTGGCAAGTTCATTGTATTACCAGgtgtttttct ... ttcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGAGATTATCAAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctgtgaccactttttttataagtattcttttatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGAGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA
                                          ttattcctctc  CT-rich tract
          actttttttataagta  TA-rich tract