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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataccccagtgctatattgaatgtccgtgttgttttatctttctactaaatgaaatcatctgtctgaaatggttttcatatttcctatatttgatcattcattgttataaatatgtttacagGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTCTTGTAAATTAGGG

Basic information

species Glycine max
transcript GLYMA05G08220.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193173|gb|HO033607.1|HO033607
EST:     GAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAG                         GAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGAC
genomic: GAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaataatac ... atgtttacagGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggttttcatatttcctatatttgatcattcattgttataaatatgtttacagGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTCTTGTAAATTAGGG
                     atttgat  putative branch site (score: 5)
                  tatatttgatcattca  TA-rich tract