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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtgaaaattattattgttttgatttgtatacaacccaatttctaatttataatattttgtatttactggtcttggctcctgaaacagGACATAAAAAGTGATATGAATGCAATGATGAGGTCTCAAGCAGTTGTTTCAGAAGGATCCTTTATCGGTTGTCATG

Basic information

species Glycine max
transcript GLYMA05G08110.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08110.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0016g04550.t01 (Vitis vinifera), 3'ss of exon 6
----gtaattgtgaaaattatt-attgttttgatttg-tatacaacccaatttctaatttataatattttgtatttactggtcttggctcctgaaacagGACATAAAAAGTGATATGAATGCAATGATGAGGTCTCAAGCAGTTGTTTCAGAAGGATCCTTTATCGGTTGTCATG
    ||   | |    ||| || ||| | |  || || |  |     || |||   |||| | || ||| || | | |  | ||||  | ||||||||||||||||| ||||| |||||| |||||||||   |    || | || | |||||||||| || || ||   |||||
gcatgtgtctctttctattgtttattatgtatatatggtgaatgttacagttttatatttcttat-tttagtttctgcatgccttgtgtgctgaaacagGACATAAAGAGTGAGATGAATCCAATGATGAATCCCAGGGCTGCTGGTCCAGAAGGATCATTGATTGGAGTTCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccaatttctaatttataatattttgtatttactggtcttggctcctgaaacagGACATAAAAAGTGATATGAATGCAATGATGAGGTCTCAAGCAGTTGTTTCAGAAGGATCCTTTATCGGTTGTCATG
       ttctaat  putative branch site (score: 2)
                                           ctcct  putative PPT
     atttctaatttataat  TA-rich tract