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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttggtggggttttactgttttctcaaacaatgtgcaggtaagacaattaacctgccaatatttactgttttctcaaacaactgattatgtgtgaaacagGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTGAAGGTAGAGGTTGGAAATTTTGGGCTGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAA

Basic information

species Glycine max
transcript GLYMA05G04340.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os10g40590.1 (Oryza sativa), 3'ss of exon 5
tttggtggggttttactgttttctcaaacaatgtgcaggtaagacaatta-----acctgccaatatttactgttttctcaaacaactgattatgtgtgaaacagGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTGAAGGTAGAGGTTGGAAATTTTGGGCTGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAA
  |    | |    ||  | |||| |  | | |  ||  ||| |   ||      |  |  ||  |  ||    ||  |     |  | ||| | ||| |  ||||| ||||| ||||| |  ||| | || ||||| |||||||| | ||||||||||||||||| |||||| ||  |   |   || ||||||||   ||| |
--taaaagtggcagacactgttctgatgccaggcacat-taatattcttctctacatttcacacaacatatgagttaatttgttagtttattct-tgtcac-cagGTTAGTCATCATCCGATGGTCATGGCATGCCATTGTGAAGGGAAAGGTTGGAAATTTTGGGGTGACAGCAATCTAAAGAGCAAATTTTGGGGGCAGTCCA

upper sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 6
lower sequence: AT4G22540.3 (Arabidopsis thaliana), 3'ss of exon 5
tttggtggggttttactgttttctcaaac--aatgtgcaggtaagacaattaacctgccaatatttactgttttctcaaacaactgattatgtg--tgaaacagGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTGAAGGTAGAGGTTGGAAATTTTGGGCTGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAA
     ||       | | ||  ||||||   |   ||     || | ||||    |   ||| |||||         | |  |    |  | ||  |  || |||| |||||||||||||||||  | ||||||||||||||||||| ||| ||||| ||||||| ||||| |||| |  |||||||||||||||| ||||| |
--gtatgtcacacaaattttaactcaaatttagaatgtgatgaacataattg---ttagaatctttaccaagactagagaatatcattcttttggttataatagGTCAGTCACCATCCAACTGTTATCGCCTGCCACTGTGAAGGTAAAGGGTGGAAGTTTTGGGGTGACACTAACCTCAGGTCAAAGTTTTGGGGGAGGTCGA

upper sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 3'ss of exon 4
--------tttggtggggttttactgttttctcaaacaatgtgcaggtaagacaattaacctgccaatatttactgttttctcaaacaactgattatgtgtgaaacagGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTGAAGGTAGAGGTTGGAAATTTTGGGCTGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAA
        |    |  |   | | |   ||  |||    | |     |  ||  |||  | |  ||  |    || ||||          || ||||   |||||||||| ||||| || |||||  || |||||||||| |||||||||| ||| |||||||| ||||||||||||||| | ||  |||| ||||||||| | ||||
ctcttctatcaattaagtcctgaattccttagcaagatttatttttctctgatcattgtcatttcatcaccccctttttttgtg-----ttgtttat---tgaaacagGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAA

upper sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 6
--------tttggtggggttttactgttttctcaaacaatgtgcaggtaagacaattaacctgccaatatttactgttttctcaaacaactgattatgtgtgaaacagGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTGAAGGTAGAGGTTGGAAATTTTGGGCTGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAA
        |    |  |   | | |   ||  |||    | |     |  ||  |||  | |  ||  |    || ||||          || ||||   |||||||||| ||||| || |||||  || |||||||||| |||||||||| ||| |||||||| ||||||||||||||| | ||  |||| ||||||||| | ||||
ctcttctatcaattaagtcctgaattccttagcaagatttatttttctctgagcattgtcatttcatcaccccctttttttgtg-----ttgtttat---tgaaacagGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaacctgccaatatttactgttttctcaaacaactgattatgtgtgaaacagGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTGAAGGTAGAGGTTGGAAATTTTGGGCTGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAA
            aatatttactgtttt  TA-rich tract