1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtcgtacctggatgaataaaaatgaaactgagtatggaagtacccttttctatctttagcattgattgatcaatcattgacatccattttatttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATC
species | Glycine max |
transcript | GLYMA05G02740.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTEST: gi|21994008|gb|BQ785536.1|BQ785536
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTEST: gi|208116354|gb|GD920377.1|GD920377
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: AAAACATACCACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTEST: gi|58016463|gb|CX703205.1|CX703205
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
ttttctatctttagcattgattgatcaatcattgacatccattttatttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATC
cattgac putative branch site (score: 3)
tccattttattttt CT-rich tract
atccattttattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgtacctggatgaataaaaatgaaactgagtatggaagtacccttttctatctttagcattgattgatcaatcattgacatccattttatttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATC
- - - -ctggatg
- - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatcca