1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgctttctctcggtctttctttctgttgtttctcctaaggaccttatgatgtctgattaactttttgacacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
species | Glycine max |
transcript | GLYMA05G01930.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAG GTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAGEST: gi|23728418|gb|BU762261.1|BU762261
genomic: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAGgtatgctttc ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
EST: TTGTTGTGGTCTCTCAG GTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAGEST: gi|26057704|gb|CA800618.1|CA800618
genomic: TTGTTGTGGTCTCTCAGgtatgctttc ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
EST: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAG GTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAGEST: gi|14991232|gb|BI316905.1|BI316905
genomic: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAGgtatgctttc ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
EST: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAG GTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAGEST: gi|51345186|gb|CO985919.1|CO985919
genomic: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAGgtatgctttc ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
EST: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAG GTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAGEST: gi|16996432|gb|BM085804.1|BM085804
genomic: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAGgtatgctttc ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
EST: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAG GTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
genomic: TGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAGgtatgctttc ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
tgttgtttctcctaaggaccttatgatgtctgattaactttttgacacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
attaacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttctctcggtctttctttctgttgtttctcctaaggaccttatgatgtctgattaactttttgacacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA