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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttgttgtagctttaatggttgtattgaagacttgtattttttgtcaaaatagtataagaaagctggaactgagcagacattctgtcctccattttcagGTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTG

Basic information

species Glycine max
transcript GLYMA04G43650.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43650.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G087692_T01 (Zea mays), 3'ss of exon 5
-gcttgttgtagctttaatggttgtattgaagacttgtattttttgtcaaaatagtataagaaagctggaactgagcagacattctgtcctccattttcagGTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTG
        ||    ||||   ||| ||| |  |    || | | |||     |  ||| |   |  ||          | | || | |    | |||  |||| || || || || || |||||||| |||||||| || ||||||||||| |||||||||||| |||||   |||| |||  | | ||
ttacaacggtcagattaaatcttgcattcat-ataactactctatgttttcctgttatgatccatttgttttaattgtggctttgtattgcacttttcaagGTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATG

upper sequence: GLYMA04G43650.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G22800.1 (Arabidopsis thaliana), 3'ss of exon 7
gcttgttgtagctttaatggttgtattgaagacttgtattttttgtcaaaatagtataagaaagctggaactgagcagacattctgtcctccattttcagGTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTG
          |  |   ||  | | ||    |  |  | ||  | ||    |||||      || || ||  || ||    |||| |  ||  |||||||||| | || || |||||||| ||||| ||||| ||||| |  ||||| || |||||||||||||| ||||||||||||||  | || |
----------gtgtgtgtgaatatcttagcaagatcaagttgatttc----tagtact---gaggtgaaa--gaacatggcttctcttttct-ttttcagGTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaatagtataagaaagctggaactgagcagacattctgtcctccattttcagGTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTG
                                    ttctgtcctccatttt  CT-rich tract
     atagtataa  TA-rich tract