1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatgttgagccacttcttgttttattgtaacttttaggtgtttaattagtagatttgtcagtgctgattagtcatggttaattgccttttgtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAA
species | Glycine max |
transcript | GLYMA04G43390.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|193682413|gb|FK624617.1|FK624617
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|14012147|gb|BG727069.1|BG727069
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|254340902|gb|GR854630.1|GR854630
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: CCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|254340903|gb|GR854631.1|GR854631
genomic: CCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: ATTTGAGTATCTCCAG ATG-TACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|193681609|gb|FK623331.1|FK623331
genomic: ATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACEST: gi|31561978|gb|CD487816.1|CD487816
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAAC
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|254326214|gb|GR840806.1|GR840806
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|298187350|gb|HO034499.1|HO034499
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGEST: gi|120533661|gb|EH261794.1|EH261794
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
ttagtagatttgtcagtgctgattagtcatggttaattgccttttgtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAA
ttgccttttgttttt CT-rich tract
ttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgttgagccacttcttgttttattgtaacttttaggtgtttaattagtagatttgtcagtgctgattagtcatggttaattgccttttgtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATGTTCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA