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gtaaggcagatctttgttaataataaaaaaaatgtgtgagaaagacattggataatctgacaggagtgtcatatttgattttactttaacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTTCCACTGCAGTTTCAATGTGGGACGCTGATTTCTATGTCAAGGTGGATG
species | Glycine max |
transcript | GLYMA04G43340.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATNNTCTTTEST: gi|23052841|gb|BU577332.1|BU577332
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTEST: gi|8827480|gb|BE211210.1|BE211210
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: GAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTEST: gi|151395197|gb|EV265068.1|EV265068
genomic: GAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTEST: gi|192305500|gb|FG994294.1|FG994294
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
aagacattggataatctgacaggagtgtcatatttgattttactttaacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTTCCACTGCAGTTTCAATGTGGGACGCTGATTTCTATGTCAAGGTGGATG
ctttaac putative branch site (score: 3)
ttttacttt CT-rich tract
atatttgattttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcagatctttgttaataataaaaaaaatgtgtgagaaagacattggataatctgacaggagtgtcatatttgattttactttaacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTTCCACTGCAGTTTCAATGTGGGACGCTGATTTCTATGTCAAGGTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA