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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagacaaatacattactatttttgtttttccatgcggtgtggtaactgtttatttacttccttttattccatgccaaaacagGTAATAAGAAAATTTCACTTGTGTTTGGTTGGTCCGAGAGATATAAGGTAGCAGTGGGCATTGCCGAGGCTTTGGATTATCTGCATTCTAAAGACGATCA

Basic information

species Glycine max
transcript GLYMA04G42390.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525551|gb|BU084362.1|BU084362
EST:     TCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATG                         GTAATAAGAAAATTTCACTTGTGTTTGGTTGGTCCGAGAGATATAAGGTAG
genomic: TCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtagacaaat ... gccaaaacagGTAATAAGAAAATTTCACTTGTGTTTGGTTGGTCCGAGAGATATAAGGTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccatgcggtgtggtaactgtttatttacttccttttattccatgccaaaacagGTAATAAGAAAATTTCACTTGTGTTTGGTTGGTCCGAGAGATATAAGGTAGCAGTGGGCATTGCCGAGGCTTTGGATTATCTGCATTCTAAAGACGATCA
            tggtaac  putative branch site (score: 2)
               taactgtttattta  TA-rich tract