1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccccccctcctctcttctttatcttaacaagtcatttttcatgggaaaaaaatgttagggtttgttttatctgtctctaacttgatttgcttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGCGCCTTGAGTCCTAAAGACCGTGAG
species | Glycine max |
transcript | GLYMA04G42250.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATEST: gi|14259525|gb|BG882433.1|BG882433
genomic: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
EST: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATEST: gi|15662595|gb|BI699966.1|BI699966
genomic: GATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
EST: ATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAG TTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
genomic: ATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGgtgctctttg ... ttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAAT
aaaaaaatgttagggtttgttttatctgtctctaacttgatttgcttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGCGCCTTGAGTCCTAAAGACCGTGAG
tttgctt CT-rich tract
tttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccccctcctctcttctttatcttaacaagtcatttttcatgggaaaaaaatgttagggtttgttttatctgtctctaacttgatttgcttataagcagTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGCGCCTTGAGTCCTAAAGACCGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
ccccccc
- - - -tcctctc
- - - - - - - - - - - - - -caagtca
- - - - - - - - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg