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gtaagtaaagccatatttcaatcattaatatagatatttcgttattgagaatatatatatatatatatatatatatatatatatatgctgttatggttattttgtagGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATG
species | Glycine max |
transcript | GLYMA04G41600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGAT GTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAEST: gi|254327481|gb|GR837104.1|GR837104
genomic: GCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATgtaagtaaag ... tattttgtagGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGA
EST: GCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGAT GTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGG-TTTGA-GATTCTCGAEST: gi|18040670|gb|BM308964.1|BM308964
genomic: GCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATgtaagtaaag ... tattttgtagGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGA
EST: GCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGAT GTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAEST: gi|51338286|gb|CO982152.1|CO982152
genomic: GCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATgtaagtaaag ... tattttgtagGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGA
EST: GTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGAT GTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGA
genomic: GTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATgtaagtaaag ... tattttgtagGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGA
atatatatatatatatatatatatatatatatatgctgttatggttattttgtagGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATG
ttatttt CT-rich tract
tatatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaagccatatttcaatcattaatatagatatttcgttattgagaatatatatatatatatatatatatatatatatatatgctgttatggttattttgtagGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA