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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatccctataattggtcaactgcatgttgcttattctgttctttggttattttagttaaaatcttcttgtcatttaatttgaatctgttcaacatttccagGTTTCCGTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCCATTGCTTGGTTCATTTTCCAAGTTTCATCAG

Basic information

species Glycine max
transcript GLYMA04G41590.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41590.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0074g00190.t01 (Vitis vinifera), 3'ss of exon 6
gtacatatccctataattggtcaactgcatgttgcttattctgttctttggttattttagtt--aaaat-cttcttgtcatttaatttgaatctgttcaacattt-ccagGTTTCCGTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCCATTGCTTGGTTCATTTTCCAAGTTTCATCAG
||| | ||     |||     | | | |    |||||| ||  |  |||  |   |  | ||  | ||| ||| || |  | | | ||||   ||  |||  ||| |||||||||| || |||||||||||||||||||| |||||| | ||||||   ||||| |||||  ||||| ||||||| || ||||| || |||||
gtataaatgaaactaagcttcccaatacgc-ctgcttaatcaatgattttatagatacattttgataatacttgtttttgtcttacttga---tgagcaatgttttccagGTTTCCATTTTTTGGAAAGAAATACCAGCTGAAATTTTCCAATGATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193658095|gb|FK602556.1|FK602556
EST:     TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAA                         GTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTG
genomic: TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatcc ... acatttccagGTTTCCGTTATTTGGAAAGAAATACCAGCTAAAATTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttagttaaaatcttcttgtcatttaatttgaatctgttcaacatttccagGTTTCCGTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCCATTGCTTGGTTCATTTTCCAAGTTTCATCAG
                         atttaat  putative branch site (score: 4)
                                              catttcc  putative PPT
                       tcatttaatttgaat  TA-rich tract