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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcatttcaatgttttgcccagaccttgtttaactacataagaatttgcttgtcattgaaattctctctctcacactcctaaatctttttctttgatgcttgctaatggagagtttcctctatatttgcagCTCACCCATGGTTGAGAAACGAAAAAAATGCTATTCCTTTAGATATTTTGATATACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGC

Basic information

species Glycine max
transcript GLYMA04G40920.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|197664621|gb|FD480324.1|FD480324
EST:     ACTTCTGAACAAGGACCACAGGAAAAGGATGACTGCTGCTCAAGCTTTAG                         CTCACCCATGGTTGAGAAACGNNNNNNNTGCTATTCCTTTAGATATTTTGA
genomic: ACTTCTGAACAAGGACCACAGGAAAAGGATGACTGCTGCTCAAGCTTTAGgtatgtttca ... atatttgcagCTCACCCATGGTTGAGAAACGAAAAAAATGCTATTCCTTTAGATATTTTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctaaatctttttctttgatgcttgctaatggagagtttcctctatatttgcagCTCACCCATGGTTGAGAAACGAAAAAAATGCTATTCCTTTAGATATTTTGATATACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGC
                        tgctaat  putative branch site (score: 2)
                                     tttcctctatattt  putative PPT
     aatcttttt  TA-rich tract