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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatatatttagcatttttagattttttcttctggacaatatgccagtcacttatatttatttaacattgtgtcaatgcagTGGGTTAGCCACCGCAATCACCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTCAATCCCGACAAATATCGAAAACTACTAAAAGCTAGTTGGA

Basic information

species Glycine max
transcript GLYMA04G40460.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40460.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0098g00750.t01 (Vitis vinifera), 3'ss of exon 6
------gtcatatatttagcatttttagattttttcttctggacaatatgccagtcacttatatt--tatttaacattgtgtcaatgcagTGGGTTAGCCACCGCAATCACCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTCAATCCCGACAAATATCGAAAACTACTAAAAGCTAGTTGGA
||| | || || | | | ||| || | |||| | | || | | ||| | || | || | ||||||||||||||||||||||| || ||||| || |||| ||| |||||||| |||||||| ||||| | | ||| ||||||||||| || | |||||||
gtcaataccattgaattcacagtaacattctcaatctcttgtgctg-atgcttatgtttgattctaatgtttcatatgttctccactcagTGGGTTAGCCACCGCAATCATCGAGGAAACATCTGTGGTGTAGATTTTATATGGCTTCTTAATCCAAATAGATACCGAAAACTACTGAAGACAAGTTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttctggacaatatgccagtcacttatatttatttaacattgtgtcaatgcagTGGGTTAGCCACCGCAATCACCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTCAATCCCGACAAATATCGAAAACTACTAAAAGCTAGTTGGA
                                 atttaac  putative branch site (score: 3)
 tcacttatatttattt  TA-rich tract