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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacattactctttaccttgttgctttgttgaagtgcctctgaaactaaatttgcattgagcagGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT

Basic information

species Glycine max
transcript GLYMA04G38800.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38800.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 3'ss of exon 22
--gtaaacattactctttaccttgttgctttgttgaagtgcctctgaaactaaatttgcattgagc----agGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT
   |   | ||  ||||  | | | |    | ||    |    ||  |||   |||   | |  ||    |||||||||||||||  |||| ||||| |||||||| ||||| |||||||| |  || |||||||| |||||| |  | ||||| ||  ||||||| |||||
gtattttcttttgtcttgtcttagatatcatcttaccttcttgctttaacatgattctaactttgcttatagGTATTGAAACAGTGAGAAGGGACAACTGTTTATTAGTAAAGAACCTGGTTACTGAGTGCCTTCATAAAATACTAGTGGACAGAGATGTTCCTGGTGCAGT

upper sequence: GLYMA04G38800.2 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G115245_T01 (Zea mays), 3'ss of exon 6
------------------------------gtaaacattactcttt--accttgttgc-----tttgttgaagtgcctctgaaactaaatttgcattgag--cagGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT
                               |||||  |  || ||  |  | |   |     || |||    | ||| | |||     | |   ||| |  ||||||||||||| ||  |||| ||||| |||||| ||||||| |||||||| | ||| |||||||| |||||| || | ||| | ||  ||||||| |||||
gtattccttttttgtttagctgtgtaaagcataaactattttcattggatgtggacacagatgttagttatccttcctttcaaatgtcttctatcttgcgtgcagGTATTGAAACTGTAAGAAGGGACAACTGTTTACTGGTAAAGAACCTGGTAACCGAGTGCCTTCATAAAATACTGGTAGACCGTGATGTTCCTGGTGCAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttaccttgttgctttgttgaagtgcctctgaaactaaatttgcattgagcagGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT
                                  aactaaa  putative branch site (score: 2)
                                 aaactaaattt  TA-rich tract