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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaacagaaacagccaaataaataaatttatttttaagaaaaaaggaaaaagaatggttttctttttttctttactactactactattattattattattgacaaaaacatcattttcagGATACTGGTAGTCATTTCTGGGACGCAGAGGACCAGCGGCAAAAGTTTCTTCATCCATGTGGATTCAGCAACAACTTATGTTCCTTTCATTAATATAAAA

Basic information

species Glycine max
transcript GLYMA04G37690.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207716391|gb|GD699419.1|GD699419
EST:     CAGTCTCATTTTTTCTTCAAGGGCAGAGGTCAAATGTGTTCTCTGAGGAG                         GATACTGGTAGTCATTTCTGGGACGCAGAGGACCAGCGGCAAAAGTTTCTT
genomic: CAGTCTCATTTTTTCTTCAAGGGCAGAGGTCAAATGTGTTCTCTGAGGAGgtataaacag ... tcattttcagGATACTGGTAGTCATTTCTGGGACGCAGAGGACCAGCGGCAAAAGTTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttactactactactattattattattattgacaaaaacatcattttcagGATACTGGTAGTCATTTCTGGGACGCAGAGGACCAGCGGCAAAAGTTTCTTCATCCATGTGGATTCAGCAACAACTTATGTTCCTTTCATTAATATAAAA
                               tattgac  putative branch site (score: 2)
                                             tcattttc  putative PPT
                tactattattattatt  TA-rich tract