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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatgatttgacctctaaatccctactccataaaccacttcttttttagaagccttttggttgcttttcccttttactttttgttccatagttctaaatttgctttgattcctcccttctgttcagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT

Basic information

species Glycine max
transcript GLYMA04G34140.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34140.2 (Glycine max), 3'ss of exon 6
lower sequence: AT5G61730.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgcaatgatttgacctctaaatccctactccataaaccacttcttttttagaagccttttggttgcttttcccttttactttttgttccatagttctaaatttgctttgattcctcccttctgttcagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT
                                                                                             || | | ||  || ||  |||   |   ||   |  |    |||||||||   |    || ||| |       | | |||   ||| ||| || | || || | |||||| |  |  || |||||| ||||||||||  ||||  | ||||||||||| || ||||| |||||||| |||||||| ||||
--------------------------------------------------------------------------------------------gta-tgccaacctttctgagatagat--tttggatctaa---tagttgtgtaggtatcatt-ctctgaacaaactgtgttt---ttggcagAATAAAATCTACATATGGCTCGTGGGAACGTTCTTTTTCTGGTTTGTATTGGCTCTCTACTTTGACAACATCATCCCCAATGCATCCGGTGTGAGAAAAT

upper sequence: GLYMA04G34140.2 (Glycine max), 3'ss of exon 6
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgcaatgatttgacctctaaatccctactccataaaccacttcttttttagaagccttttggttgcttttcccttttactttttgttccatagttctaaatttgctttgattcctcccttctgttcagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT
                                                                                                   ||| |   || | | |      |||  |  |    ||  | |||      |||| ||| |    ||  || ||    ||| ||| |||| || ||    ||||||   |  || |||||| | ||||||||| ||||  ||||||||||||||||||  |||||||| || || || || ||||
--------------------------------------------------------------------------------------------------gtaagtcaactctcaataaaat-ttccatctaa---taactctgtc-taatagtt-ctctgatcattactttttggttttggcagAATGATATCTACTTGTGGCTTCTTGGGACTTTCTTTTTGTGGTTTGTTTTGGCTCTTTACTTTGACAATATAACTCCAAATGCTTCTGGAGTAAGAAAAT

upper sequence: GLYMA04G34140.2 (Glycine max), 3'ss of exon 6
lower sequence: AT5G61690.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgcaatgatttgacctctaaatccctactccataaaccacttcttttttagaagccttttggttgcttttcccttttactttttgttccatagttctaaatttgctttgattcctcccttctgttcagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT
                                               | | |  | |       |   |||      |||   || | | |     ||| ||||    |||  |   | |                ||||| | |  ||| |  || |    | ||||   ||   |||  || |    || ||  | |||||    |  |||||| |  |||||||||||||||| || |||||||||||||| || || || || || ||||| || ||| 
----------------------------------------------gtatgtgaagggggccaagcgacttgcgtaatttctattgtatgcagacattcaaaataaattttactagttac----------------gttgtctaatagcattctctaacaagtattttaaatt---ttggtagAACATTATCTACCAGTGGCTCCTTGGGACATTCCTATTCTGGTTTGTTCTGGCTATCTACTTTGACAATATTATTCCCAACGCCTCCGGTGTAAGAAAAC

upper sequence: GLYMA04G34140.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 3'ss of exon 6
gtatgcaatgatttgacctctaaatccctactccataaaccacttcttttttagaagccttttggttgcttttcccttttactttttgttccatagttctaaatttgctttgattcctcccttctgttcagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT
                                                                           |||| | | ||  |||   | || ||  |||  |   ||          | || ||  |||    |  || |    |  |||| |  || | |||      ||||||| |||| || |||| ||||||  |||| ||||| ||||| |||||| || ||||||| ||||| || ||||||||||||||| ||||||||||||||||||
-------------------------------------------------------------------------ttctttcattattccttcttcacttttatttttaatc--atgaaaggtaattattaaggtttatcctttatattatgct--ctcacttcttatattc------ttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT
                          ctcagtgttttttttc  CT-rich tract
                                 ttttttttcttttcat  TA-rich tract