1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accaccaagggcctaaactactgtggaaagtaacaggacctttgttcattgcataccttctttgagctaactataaggtgataaattcttatttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTTCTGGAATTTCTTAAAAGAAACCAGGATGATCAAAAGTTCAGGCTAAAGC
species | Glycine max |
transcript | GLYMA04G16670.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATTAGAGCTGCTGCAAAG AACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTTEST: gi|192323163|gb|FK017389.1|FK017389
genomic: TGATTAGAGCTGCTGCAAAGgttggtttat ... atttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
EST: TTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAG AACCACAAAGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTTEST: gi|151410033|gb|EV279841.1|EV279841
genomic: TTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAGgttggtttat ... atttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
EST: TTGAAAATATCGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAG AACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
genomic: TTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAGgttggtttat ... atttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
tcattgcataccttctttgagctaactataaggtgataaattcttatttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTTCTGGAATTTCTTAAAAGAAACCAGGATGATCAAAAGTTCAGGCTAAAGC
agctaac putative branch site (score: 2)
ttcttattt putative PPT
tgataaattcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaccaagggcctaaactactgtggaaagtaacaggacctttgttcattgcataccttctttgagctaactataaggtgataaattcttatttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTTCTGGAATTTCTTAAAAGAAACCAGGATGATCAAAAGTTCAGGCTAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-ccaccaa
- - - - - gcctaaa
- - - - - - - - - -actgtgg
- - - - - - - - - - - - - - - - - - -acctttg
- - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaact