Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgtatattttgaaaattactttacaatgaatctctcaatcttttatctgtattggaaagttttatgctgatcaactaatgtttcaacagGTACTTGGGTTGCTCATGGAGTGCACAGAAGATATTGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGG

Basic information

species Glycine max
transcript GLYMA04G13880.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G13880.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os10g40550.1 (Oryza sativa), 3'ss of exon 7
gcatgtatattttgaaaattactttacaatgaatctctcaatcttttatctgtattggaaagttttatgctgatcaactaatgtttcaacagGTACTTGGGTTGCTCATGGAGTGCACAGAAGATATTGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAG-ATGAGG
   | | |||||  |     |  ||    | | | |    ||    | | ||| ||| |  |||  |   |  |||  |  | |  |   ||||         |||||  ||  | |   | || ||||| || ||||   | ||  | |||||||| |||||||| || |||||||||||||||| |  |  
--gtatgtatttccatctcgaacttg--gtaattattaggataccat-tttgtgttgcacggttgaaaattattcatttt-tatacctgtagGTGTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGCACCAC-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatcttttatctgtattggaaagttttatgctgatcaactaatgtttcaacagGTACTTGGGTTGCTCATGGAGTGCACAGAAGATATTGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGG
                                      aactaat  putative branch site (score: 2)
                     aaagttttat  TA-rich tract