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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaatgtaattgtgcatggctttttgccttatgaattatgtatgcttctgttatttcttgttatttccatgtgtttattatctgtattgtaaaatgtagGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAA

Basic information

species Glycine max
transcript GLYMA04G12490.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400877|gb|BM177659.1|BM177659
EST:     ACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAG                         GCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAAT
genomic: ACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGgtaatacata ... taaaatgtagGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctgttatttcttgttatttccatgtgtttattatctgtattgtaaaatgtagGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAA
                             tttattatctgtattg  TA-rich tract