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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgttcaatccaaactttcaaattatgatgtaaatgaataaaaatattttgtgaagcttaaggtttttatcaacagaactactgattctattgaatatatgacatttcatttatgaccttctattttcagGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTGCACCTTGTTAATTCAACTTC

Basic information

species Glycine max
transcript GLYMA04G08600.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08600.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G077844_T01 (Zea mays), 3'ss of exon 6
gtaagttgttcaatccaaactttcaaattatgatgtaaatgaataaaaatattttgtgaagcttaaggtttttatcaacagaactactgattctattgaatatatgacatttcatttatgaccttctattttcagGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTGCACCTTGTTAATTCAACTTC
                                |    | || ||    | || ||    |   |     |       ||||  | |    ||||| | |      ||  | | |   ||     || |  | ||||| ||   |||||| || ||||| ||  | ||||| ||||||||  |||||||||| ||||||||||| ||||| || ||||| ||
--------------------------------acaggattgtatgttgacatgttccagattgttcaactggaccatacagttccagaagttctagtcatccctggatttctaa---atagtactcaacatgcagGGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactactgattctattgaatatatgacatttcatttatgaccttctattttcagGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTGCACCTTGTTAATTCAACTTC
    tactgat  putative branch site (score: 2)
                                         ccttctattttc  putative PPT
                  aatatatgacatttca  TA-rich tract