1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atagttcaatctgcatatgatgaaaaatgctggaatgaaaatggtaacgtttttattgaacaattgtttcttttatttacccacatgtttctccatccagAAACGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTTAGGAGCTACAAGGGTTTGATGGTTGCAGAAAATATGACATCCAACAAAC
species | Glycine max |
transcript | GLYMA04G08530.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGNNNNN NNNCGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTTEST: gi|192331951|gb|FK026735.1|FK026735
genomic: CAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGAAAAAgtgagtattg ... ctccatccagAAACGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTT
EST: CAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGNNNNN NNNCGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTTEST: gi|192299133|gb|FG992879.1|FG992879
genomic: CAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGAAAAAgtgagtattg ... ctccatccagAAACGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTT
EST: CAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGNNNNN NNNCGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTT
genomic: CAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGAAAAAgtgagtattg ... ctccatccagAAACGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTT
aacgtttttattgaacaattgtttcttttatttacccacatgtttctccatccagAAACGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTTAGGAGCTACAAGGGTTTGATGGTTGCAGAAAATATGACATCCAACAAAC
tggtaac putative branch site (score: 2)
tttctccatcc putative PPT
ttttattgaacaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagttcaatctgcatatgatgaaaaatgctggaatgaaaatggtaacgtttttattgaacaattgtttcttttatttacccacatgtttctccatccagAAACGTCGGGAGGAATTGGGAAGGCTTGAAAAGGAGAAACAAACAGAGCTTAGGAGCTACAAGGGTTTGATGGTTGCAGAAAATATGACATCCAACAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT