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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcatattaaaagatgcccttttaataatttaaaatttgcatgagctttgcaccaatcttaatttaagaagtaatgcagGTCATAGTGGTGCTGATCATCACATGTAAATGGAGGAAAACTCAAGAACCAATCCCTGACTCTGTACTCTGTTAGTTTGTCTCTGCGGTCAATCATGGTG

Basic information

species Glycine max
transcript GLYMA04G06810.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494985|gb|EH223152.1|EH223152
EST:     TGGCATAGCAACCCCTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAG                         GTCATAGTGGTGCTGATCATCACATGTAAATGGAGGAAAACTCAAGAACCA
genomic: TGGCATAGCAACCCCTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcatat ... agtaatgcagGTCATAGTGGTGCTGATCATCACATGTAAATGGAGGAAAACTCAAGAACCA
EST: gi|193704072|gb|FK645236.1|FK645236
EST:     TGGCATAGCAACCCCTCAACTTCTACTGCCTTGGAGAGCAAGCGCAAAAG                         GTCATAGTGGTGCTGATCATCACATGTAAATGGAGGAAAACTCAAGAACCA
genomic: TGGCATAGCAACCCCTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcatat ... agtaatgcagGTCATAGTGGTGCTGATCATCACATGTAAATGGAGGAAAACTCAAGAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatttaaaatttgcatgagctttgcaccaatcttaatttaagaagtaatgcagGTCATAGTGGTGCTGATCATCACATGTAAATGGAGGAAAACTCAAGAACCAATCCCTGACTCTGTACTCTGTTAGTTTGTCTCTGCGGTCAATCATGGTG
                                tcttaat  putative branch site (score: 3)
                              aatcttaatttaagaa  TA-rich tract