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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgaactctgttgtctcactaaattgacatgtgagcacatgtgagatttcaattcatctaccttcaataaattgattgggagcaaaatattgatctatttctttggccaaataaatttctatttcagGACGGCCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCAAAGATTGTACGCATG

Basic information

species Glycine max
transcript GLYMA04G05900.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05900.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g01960.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtaagtcttgaactctgtt--gtctcact--aaattga---catgtgagcacatgtgagatttcaattcatctaccttcaataaa---ttgattgggagcaaaatattgatc-tatttctttggccaaataaat----ttctatttcagGACGGCCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCAAAGATTGTACGCATG
                      ||||     ||| | |||   || | | |  ||||| |   || ||       |||  |||   |||  |  |   ||   |  |   ||   | |  |   | |  ||||  | |||     | |   ||| |     | |||||||||  || ||||||||||||||||| |||||||  ||||||||| | |  ||||| ||||||||   ||||
gtatggtttgattgtgagtaatgtaataagagaattatgtccagttttagttcaaattcattccaagttgtgcagtgttggatcctaatgaagttgagttttgttgaggtttcccttgatgttcatttctgataatgtttaaacaggcttgtaattgcctctttatttcagGGTGGTCCTTTAAGGATTGAAGCCTCTTCAAACGGCTCCAACTCCACAATATCTAAGATTGTTTCCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattgggagcaaaatattgatctatttctttggccaaataaatttctatttcagGACGGCCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCAAAGATTGTACGCATG
               tattgat  putative branch site (score: 3)
                                           tttctatttc  putative PPT
           aaaatattgatctatt  TA-rich tract