1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctcttctctctcttttgccttatttcctttgagggataaaagaagtgtacaaattaccgtgttgaacttgaattctagctgacttttcctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAA
species | Glycine max |
transcript | GLYMA04G05550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAG CACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGEST: gi|308098158|gb|HO761329.1|HO761329
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATG
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAG CACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGEST: gi|209721045|gb|BW666302.1|BW666302
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATG
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAG CACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGEST: gi|192296477|gb|FG991627.1|FG991627
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATG
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAG CACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGEST: gi|151394491|gb|EV264362.1|EV264362
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATG
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAG CACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATG
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATG
agtgtacaaattaccgtgttgaacttgaattctagctgacttttcctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAA
agctgac putative branch site (score: 3)
ctgacttttccttttt CT-rich tract
acaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcttctctctcttttgccttatttcctttgagggataaaagaagtgtacaaattaccgtgttgaacttgaattctagctgacttttcctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA