1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtcaacttgaacattcttgattgcctatccattgttggcatctatactttgtttttggttacataaaggttctatttaaaacattttgctatgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCGCAACAAAAGTCTCGATCAGTTTCGGCAGCAT
species | Glycine max |
transcript | GLYMA04G05530.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTEST: gi|192315154|gb|FK009978.1|FK009978
genomic: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctca ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCT
EST: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCT
genomic: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctca ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCT
actttgtttttggttacataaaggttctatttaaaacattttgctatgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCGCAACAAAAGTCTCGATCAGTTTCGGCAGCAT
ttctatttaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaacttgaacattcttgattgcctatccattgttggcatctatactttgtttttggttacataaaggttctatttaaaacattttgctatgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCGCAACAAAAGTCTCGATCAGTTTCGGCAGCAT
- - -cttgaac
- - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacatt