1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tggtcaagtacttttctaaaggccaatctgagtgtatgagtagtgaaactccctggatatgttttctgattgtgctttttatgatcaaatatcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAAGGTATACTGAAGAATTATGTCTTCGTAGCTGTCCTCACTTGCACTGTCG
species | Glycine max |
transcript | GLYMA04G04810.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGTCAG GTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAAEST: gi|193582702|gb|FK537384.1|FK537384
genomic: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGTCAGgtaaagttaa ... atcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAA
EST: TGTGTTCTGTCAG GTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAAEST: gi|58019747|gb|CX706489.1|CX706489
genomic: TGTGTTCTGTCAGgtaaagttaa ... atcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAA
EST: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGTCAG GTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAAEST: gi|19453182|gb|BM954592.1|BM954592
genomic: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGTCAGgtaaagttaa ... atcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAA
EST: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGTCAG GTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAAEST: gi|6725926|gb|AW310325.1|AW310325
genomic: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGTCAGgtaaagttaa ... atcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAA
EST: CTGATCTGATATTGAATACACTTATTTTCACCTCGTCTGTGTTCTGTCAG GTTTTCAATGAGATTAGTCCGAGGGATATGGAGAGGGTAAATGTTTTTCAA
genomic: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGTCAGgtaaagttaa ... atcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAA
aaactccctggatatgttttctgattgtgctttttatgatcaaatatcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAAGGTATACTGAAGAATTATGTCTTCGTAGCTGTCCTCACTTGCACTGTCG
ttctgat putative branch site (score: 3)
tttttatgatcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtcaagtacttttctaaaggccaatctgagtgtatgagtagtgaaactccctggatatgttttctgattgtgctttttatgatcaaatatcttgacagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGGTAAATGTTTTTCAAGGTATACTGAAGAATTATGTCTTCGTAGCTGTCCTCACTTGCACTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - caagtac
- - - - - - - - - - -gccaatc
- - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - ctccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg