1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgactgtcatttggatcagacccagctttatatcaagatgcatttgttgaaaatacaattttatcttcagtttcctagttattgactatcttattttcatttaatatgtattttgtcttgtaaataagtgatatcaatttacttttccgtggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATACTGCCAATGGGCTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAA
species | Glycine max |
transcript | GLYMA04G03290.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACATAGACCTCTGCTTTGACAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|193482421|gb|FK446176.1|FK446176
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|192334034|gb|FK026191.1|FK026191
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|58020362|gb|CX707104.1|CX707104
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|19053017|gb|BM731684.1|BM731684
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|208192105|gb|GD990639.1|GD990639
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGEST: gi|58016809|gb|CX703551.1|CX703551
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTG
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|192323065|gb|FK016316.1|FK016316
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAG-ATGAAGCAGCTGAACTTTTAAG G-ATGA-CAGAA-GATGATCCTATAGCTGCTGTAGAATTTCTTTCCAA-TAEST: gi|31462375|gb|CD404403.1|CD404403
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: GGATGAAGCAGCTGAACTTTTAAG GGATGTACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCCAATAEST: gi|10848246|gb|BF070781.1|BF070781
genomic: GGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|22930015|gb|BU547154.1|BU547154
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: GCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATAEST: gi|12496252|gb|BG046971.1|BG046971
genomic: GCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
EST: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAG GGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
genomic: AACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGgtgactgtca ... tggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATA
tatgtattttgtcttgtaaataagtgatatcaatttacttttccgtggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATACTGCCAATGGGCTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAA
cttttccgt CT-rich tract
taaataagtgatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactgtcatttggatcagacccagctttatatcaagatgcatttgttgaaaatacaattttatcttcagtttcctagttattgactatcttattttcatttaatatgtattttgtcttgtaaataagtgatatcaatttacttttccgtggattttagGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATACTGCCAATGGGCTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT