1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatgggtgtagctaatgtaatttaagatttgatgcaaatttatgtctaagtgagatagccttgaaatttggatagctctgctctttttggaccggttcactgagcattttagcacaagcttaaaaggagatgtagctaccattatgcatatattagtgttcaagctaattctttcattactctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAGTAAAAAATGGAGAGTCAATTGGGGAATGAAGCTCGTTTACCTTGAACC
species | Glycine max |
transcript | GLYMA04G03080.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|10252427|gb|BE820193.1|BE820193
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGNNGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|208275174|gb|GE067994.1|GE067994
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|254325124|gb|GR834549.1|GR834549
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|207704160|gb|GD685002.1|GD685002
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: GGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|193710804|gb|FK647767.1|FK647767
genomic: GGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|209723413|gb|BW679947.1|BW679947
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCEST: gi|209723414|gb|BW679948.1|BW679948
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTC
EST: TAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|254325123|gb|GR834548.1|GR834548
genomic: TAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAEST: gi|13788314|gb|BG650906.1|BG650906
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
EST: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAG GATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
genomic: TACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGgtaatgggtg ... ctctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACA
gctaccattatgcatatattagtgttcaagctaattctttcattactctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAGTAAAAAATGGAGAGTCAATTGGGGAATGAAGCTCGTTTACCTTGAACC
agctaat putative branch site (score: 3)
ttctttcattactctt CT-rich tract
attatgcatatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgggtgtagctaatgtaatttaagatttgatgcaaatttatgtctaagtgagatagccttgaaatttggatagctctgctctttttggaccggttcactgagcattttagcacaagcttaaaaggagatgtagctaccattatgcatatattagtgttcaagctaattctttcattactctttgcagGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAGTAAAAAATGGAGAGTCAATTGGGGAATGAAGCTCGTTTACCTTGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC