1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcaattctctcacttaacacttatgctgtgattttttgtgctgttgtttatatcacaagttttcatgtgcccctgttaatatcagAATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGAAAGGCACAAAAAGCTTGCTCAATATTGT
species | Glycine max |
transcript | GLYMA04G02540.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG AATGTGAAAGCCGTCTEST: gi|21255617|gb|BQ452505.1|BQ452505
genomic: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAGgtgcaattct ... ttaatatcagAATGTGAAAGCCGTCT
EST: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG AATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACCEST: gi|20449761|gb|BQ253885.1|BQ253885
genomic: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAGgtgcaattct ... ttaatatcagAATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACC
EST: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG AATGTGAAAGCCGTCTTTGACGCTGCCATCAAAATGGTTCTTCAACCACCAEST: gi|298171524|gb|HO016556.1|HO016556
genomic: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAGgtgcaattct ... ttaatatcagAATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACCA
EST: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG AATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAA
genomic: AACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAGgtgcaattct ... ttaatatcagAATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAA
attttttgtgctgttgtttatatcacaagttttcatgtgcccctgttaatatcagAATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGAAAGGCACAAAAAGCTTGCTCAATATTGT
tgttaat putative branch site (score: 3)
cccctgtt CT-rich tract
ttgtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaattctctcacttaacacttatgctgtgattttttgtgctgttgtttatatcacaagttttcatgtgcccctgttaatatcagAATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGAAAGGCACAAAAAGCTTGCTCAATATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA