1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtactttcttatcttttgcttaaaatttatggatcattttttttcatcttttataacacagattgtcatgcgctcttgggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAAAGCTAAAGAAAAAGAGAAAAACACAGAAAGCTTGCTCCATATTATGAT
species | Glycine max |
transcript | GLYMA04G02530.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG AACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAEST: gi|192331824|gb|FK024928.1|FK024928
genomic: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGgtgtactttc ... gggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
EST: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG AACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAEST: gi|193696036|gb|FK637504.1|FK637504
genomic: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGgtgtactttc ... gggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
EST: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG AACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAEST: gi|58024705|gb|CX711446.1|CX711446
genomic: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGgtgtactttc ... gggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
EST: AGCTGATTGGTGCTCCGGCNTACATTGAGTGTAGTTCCAAAACGCAACAG AACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAEST: gi|298196909|gb|HO041652.1|HO041652
genomic: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGgtgtactttc ... gggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
EST: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG AACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAEST: gi|58021086|gb|CX707828.1|CX707828
genomic: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGgtgtactttc ... gggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
EST: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG AACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAEST: gi|151393592|gb|EV263467.1|EV263467
genomic: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGgtgtactttc ... gggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
EST: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG AACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
genomic: AGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGgtgtactttc ... gggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCA
atcattttttttcatcttttataacacagattgtcatgcgctcttgggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAAAGCTAAAGAAAAAGAGAAAAACACAGAAAGCTTGCTCCATATTATGAT
ttataac putative branch site (score: 2)
tttttttcatctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtactttcttatcttttgcttaaaatttatggatcattttttttcatcttttataacacagattgtcatgcgctcttgggatgacagAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAAAGCTAAAGAAAAAGAGAAAAACACAGAAAGCTTGCTCCATATTATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA