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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtaatgactcattaacaagtagtttctagcttcaagtatcatcagtactaggtcctcacagtttttaacatcttcaatatctgttcagATCCTAGAAGATTCAGACTTACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCGTTCTATCTT

Basic information

species Glycine max
transcript GLYMA04G01710.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01710.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 5
--gtaaagtaatgactcattaacaagtagtttctagcttc---------aagtatcatcagtactaggtcctcacagtt------tttaacatcttcaatatct-----gttcagATCCTAGAAGATTCAGACTTACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCGTTCTATCTT
   |    |  |   |  ||| || | |||||  || | |         || |  ||    |  |   |  | ||| ||      | ||| |||||| || |        | ||||| ||  ||||||||| |||||||||||||| || |||||||||||||||| |||| ||||||||||||||||  |   |||   | ||
gtttctcattgttcatttttaccatgaagtttgcagttacccagcatggaatttccagtgctgttgaattgttacatttgcttactgtaaaatcttcgatgtgcttatgatgcagATGCTGCAAGATTCAGGCTTACTCATGAGACCTCTTTTGTGAGGGATCACAGCAGTTTCTGGACTAAAACACCGTTCCTGTTTGTTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtatcatcagtactaggtcctcacagtttttaacatcttcaatatctgttcagATCCTAGAAGATTCAGACTTACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCGTTCTATCTT
                             ttttaac  putative branch site (score: 2)
                                              tctgttc  putative PPT
                            tttttaacat  TA-rich tract