1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtataaataccctcttctagctatttaatgatctgtttaatgatggtttaagactgctgaaactgcttgatgcttctttggaaacattactcagGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAG
species | Glycine max |
transcript | GLYMA04G01220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCAT GTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAGEST: gi|11274643|gb|BF324980.1|BF324980
genomic: GGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCATgtatgtataa ... cattactcagGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAG
EST: GGAGCACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCAT GTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAGEST: gi|151395356|gb|EV265227.1|EV265227
genomic: GGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCATgtatgtataa ... cattactcagGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAG
EST: GGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCAT GTTCTTGGAAACAAGTATC
genomic: GGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCATgtatgtataa ... cattactcagGTTCTTGGAAACAAGTATC
atgatggtttaagactgctgaaactgcttgatgcttctttggaaacattactcagGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAG
aaacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtataaataccctcttctagctatttaatgatctgtttaatgatggtttaagactgctgaaactgcttgatgcttctttggaaacattactcagGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG